PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID KHN03857.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 504aa    MW: 54994.2 Da    PI: 5.7023
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
KHN03857.1genomeTCUHKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11356402455
                 HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
         HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                 +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ +I +Lq
  KHN03857.1 356 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAITFITDLQ 402
                 799***********************66......*****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142151.1E-4351227IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.259352401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-17355418IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.39E-13355406No hitNo description
Gene3DG3DSA:4.10.280.104.4E-17356421IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-9356402IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.6E-13358407IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048736.63E-4436504No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0032440Molecular Function2-alkenal reductase [NAD(P)] activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MVGEKFCVSE DDKGVLESVL GAEAVAFFIS ALSNNVFSRV VAPSAGADPA LRQRLCQLVE  60
GSKWNYAVFW QVAGLKSGGS ALVWGDGHCS DPKGERNGVG KEDEQEVRKK VLQKLDACFG  120
GSLLKDANHV RLDRVSELLM FYLSSMCYIF GFDSLCGPGS SFKSGKFIWA SDAAGCLNQL  180
ESRSFLGKLA GLHTVVFVPL KSGVVELGSF EMVPEEQGVV EMVRTAFGES SPGQAKVFPK  240
IFGHELSLGD TKSQSITISF SPKVEDDPGF TSDSYEVQAL GVNHAYGNSS NGTLGDGNEG  300
TLFPQLNQMM AGNFNAQARV PCLDLGNEDS SSIHADERKP KKRGRKPANG REEPLNHVEA  360
ERQRREKLNQ RFYALRAVVP NISKMDKASL LGDAITFITD LQMKIKVLEA EKNMGNNKDQ  420
KLSLPDMDFQ EREDDTVVTV RCPLDIHPVS NVVKTFREHQ IVAQDSNVST ADDKIIHTFS  480
IRTEGGEAAA IQLKEKLEAS LSKS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A8e-17482276192Transcription factor MYC3
4rqw_B8e-17482276192Transcription factor MYC3
4rs9_A8e-17482276192Transcription factor MYC3
4yz6_A8e-17482276192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337345RKPKKRGRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00099PBMTransfer from AT4G16430Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150410.0AP015041.1 Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006588665.10.0PREDICTED: transcription factor bHLH3-like
RefseqXP_006588664.10.0PREDICTED: transcription factor bHLH3-like
TrEMBLA0A0B2P8B80.0A0A0B2P8B8_GLYSO; Transcription factor bHLH3
TrEMBLI1L8B70.0I1L8B7_SOYBN; Uncharacterized protein
STRINGGLYMA10G03950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82633445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16430.11e-155bHLH family protein
Publications ? help Back to Top
  1. Qi X, et al.
    Identification of a novel salt tolerance gene in wild soybean by whole-genome sequencing.
    Nat Commun, 2014. 5: p. 4340
    [PMID:25004933]